Cambridge Healthtech Institute's 9th Annual

Antibodies Against Membrane Protein Targets – Part 2

Targeting GPCRs, Ion Channels and Viral Spike Proteins

September 29 - 30, 2021 EDT

As the pharmaceutical and biotech industries increasingly shift attention to biologics, much more attention is being paid to the prospect of developing biotherapeutics against membrane-bound targets. For the large GPCR and ion channel target classes, biologics offer improved selectivity, an alternative for targets with known function that have not been amenable to small molecule drugs and the potential for using antibodies for the targeted delivery of therapeutics. However, for the field to advance, fundamental challenges in antigen quality and presentation, discovery methodologies, protein engineering and the pace of discovery must be resolved. This two-part meeting provides a forum in which discovery biologists and protein engineers can come together to discuss next generation strategies and technologies that will allow biologic drugs for these target families to advance into the clinic and beyond.

Wednesday, September 29

PLENARY KEYNOTE PROGRAM

11:30 am

Plenary Chairperson’s Remarks

An-Dinh Nguyen, Team Lead, Discovery on Target, Cambridge Healthtech Institute
Sunny Al-Shamma, President, Beacon Discovery a Eurofins Company
11:45 am

PLENARY: G Protein-Coupled Receptors and Beta Arrestin-Coupled Receptors: A Tale of Two Transducers

Robert J. Lefkowitz, MD, James B. Duke Professor of Medicine, Professor of Biochemistry, Duke University Medical Center; Investigator, Howard Hughes Medical Institute; 2012 Nobel Laureate in Chemistry

Beta arrestins are ubiquitous multifunctional adaptor proteins which mediate desensitization, endocytosis and signaling of most GPCRs. My lecture will cover how they were discovered as the mediators of rapid GPCR desensitization; the appreciation of their roles in endocytosis and, counterintuitively, as signal transducers in their own right; their roles in biased GPCR signaling and its therapeutic implications; and current understanding of the conformational basis of biased signaling.

12:20 pm LIVE:

Q&A Plenary Discussion

Panel Moderator:
Annette Gilchrist, PhD, Associate Professor, Pharmaceutical Sciences, Midwestern University
Panelist:
Robert J. Lefkowitz, MD, James B. Duke Professor of Medicine, Professor of Biochemistry, Duke University Medical Center; Investigator, Howard Hughes Medical Institute; 2012 Nobel Laureate in Chemistry
12:30 pm

PLENARY: Next-Generation Targeted Molecular Therapies

Alexandra Glucksmann, PhD, President & CEO, Cedilla Therapeutics

Despite decades of work, the need for small molecule-based targeted therapy in oncology is still immense. Amino-acid sequence and structure has been the primary lens to understand protein function, which has limited the reach of some key cancer targets. I highlight how we are accessing key cancer drivers that have been considered undruggable by considering the native full-length protein together with the relevant post-translational modifications, protein-protein interactions, and sub-cellular localization.

1:05 pm LIVE:

Q&A Plenary Discussion

Panel Moderator:
Joe Patel, PhD, Vice President, Structural Biology, Treeline Biosciences
Panelist:
Alexandra Glucksmann, PhD, President & CEO, Cedilla Therapeutics
1:15 pm Enjoy Lunch on Your Own
1:55 pm Refreshment Break in the Exhibit Hall with Poster Viewing

TARGETING GPCRs

2:35 pm Organizer’s Welcome Remarks
Aaron Sato, PhD, CSO, Biopharma, Twist Biopharma
2:45 pm

Lead Identification, Characterization and Development of an Anti C5aR GPCR Antibody

Juergen Klattig, PhD, Laboratory Leader, Core Technologies, MorphoSys AG, Germany

Antibody compounds binding classical target classes, as e.g. receptor tyrosine kinases or cytokines, are widely used as therapeutics. Innovative selection strategies have to be applied to broaden target space and bring antibodies against new target classes, as GPCRs, into clinical development. MOR210/TJ210 is a novel human antibody directed against C5aR1. C5aR1, the receptor of the complement factor C5a, is investigated as a potential new drug target in the field of immuno-oncology and autoimmune diseases.

3:15 pm

Antibody-Drug Conjugates Targeting LGR5-Expressing Tumors and Cancer Stem Cells

Kendra Carmon, PhD, Assistant Professor, Center for Translational Cancer Research, University of Texas

LGR5 is highly expressed in colorectal tumors and marks cancer stem cells responsible for driving tumor growth. We generated LGR5-targeted antibody-drug conjugates (ADCs) and showed they could eliminate colorectal tumors in mouse models. However, a fraction of tumors eventually relapsed due to the dynamic plasticity of cancer cells. Our group is identifying new targets for ADC development and evaluating novel combination therapies to better target tumor cell plasticity and heterogeneity.

Aaron Sato, PhD, CSO, Biopharma, Twist Biopharma

To enable the discovery of functional GPCR antibodies, Twist Biopharma grafted GPCR-binding motifs into a focused antibody library. By incorporating these motifs into the antibody heavy chain CDR3, we developed our first generation GPCR library. Another approach mined the patented GPCR antibody sequences using sequence information to guide the design of another synthetic library. The utility of both libraries demonstrated the ability to discover potent functional antibodies against multiple GPCR targets.

4:15 pm Refreshment Break in the Exhibit Hall with Poster Viewing
4:55 pm

CXCR4 Antagonist AD-214 as Therapy for Interstitial Lung Disease

Michael Foley, PhD,CSO, AdAlta, Australia

The expression of CXCR4 is low in non-diseased lung but upregulated in Idiopathic Pulmonary Fibrosis and other Interstitial lung diseases. CXCR4 is a central player in the progression of IPF and expressed in cell-types known to contribute to IPF/ILD. The single domain i-body AD-214 antagonises CXCR4 and is anti-fibrotic in several preclinical models of fibrosis and has recently been found to be safe in a first in human clinical trial.

Erica Lovett, Research Scientist, AbCellera

As the pandemic continues, more transmissible SARS-CoV-2 variants that evade COVID-19 treatments have emerged. As part of its ongoing pandemic response, AbCellera discovered a highly potent monoclonal antibody, bebtelovimab (LY-CoV1404) from a convalescent COVID-19 patient sample that could present a long-term solution to the ongoing pandemic. Bebtelovimab targets a rarely-mutated epitope on the SARS-CoV-2 spike protein and potently neutralizes variants of concern, including the Delta variant.

5:55 pm Close of Day

Thursday, September 30

7:30 am Registration Open and Morning Coffee
8:25 am

Chairperson's Remarks

Laura M. Walker, PhD, CSO, Adagio Therapeutics

SPECIAL PRESENTATION (VIRTUAL SESSION)

8:30 am

Pipeline Update for Antibody-Based Therapeutics against GPCR and Ion Channel Targets

Catherine Hutchings, PhD, Independent Consultant, United Kingdom

GPCRs and ion channels represent some of the most important membrane protein drug target classes across a wide range of therapeutic areas. An update on antibody-based therapeutics in the GPCR/ion channel pipeline will be provided outlining the breadth and diversity of the target landscape, progress in preclinical and clinical development, including next generation modalities.

STRUCTURAL INSIGHTS (VIRTUAL SESSION)

9:00 am

Structures of Active-State Orexin Receptor 2 Rationalize Peptide and Small-Molecule Agonist Recognition and Receptor Activation

Kaspar Hollenstein, PhD, Associate Principal Scientist, Merck & Co, Inc.

Narcolepsy is a neurological disorder that impairs the brain's ability to control sleep-wake cycles. Agonists of the orexin receptor 2 (OX2R) have shown promise as novel therapeutics that directly target the pathophysiology. Cryo-EM structures of OX2R reveal that an extended carboxy-terminal segment of the endogenous peptide agonist OxB reaches into the core of OX2R to stabilize an active conformation, while a recently discovered small-molecule agonist makes similar key interactions deep inside the orthosteric pocket. Comparison with antagonist-bound OX2R suggests a molecular mechanism for receptor activation. The structures enable structure-based discovery of therapeutic orexin agonists for the treatment of narcolepsy.

9:30 am Interactive Discussions

Interactive Discussions are informal, moderated discussions, allowing participants to exchange ideas and experiences and develop future collaborations around a focused topic. Each discussion will be led by a facilitator who keeps the discussion on track and the group engaged. For in-person events, the facilitator will lead from the front of the room while attendees remain seated. For virtual attendees, the format will be in an online networking platform. To get the most out of this format, please come prepared to share examples from your work, be a part of a collective, problem-solving session, and participate in active idea sharing. Please visit the website's Interactive Discussions page for a complete listing of topics and descriptions.

10:15 am Coffee Break in the Exhibit Hall with Poster Viewing
11:00 am

Structure and Dynamics of the B Cell Co-Receptor Complex

Stephen C. Blacklow, Professor & Head, Biological Chemistry & Molecular Pharmacology, Harvard Medical School

Signaling through the CD19-CD81 co-receptor complex, in combination with the BCR, is a critical determinant of B cell development and activation. Upon binding to CD19, CD81 opens to expose a hydrophobic CD19-binding surface and reorganizes its transmembrane helices to occlude a cholesterol binding pocket present in the apoprotein. Our data reveal the structural basis for CD19-CD81 complex assembly, providing a foundation for rational design of therapies for B cell dysfunction.

TARGETING VIRAL SPIKE PROTEINS

11:30 am

Potent Neutralization of SARS-CoV-2 by Human VH Domains

Dimiter Dimitrov, PhD, Professor and Director, Center for Antibody Therapeutics, University of Pittsburgh; Executive Vice President and CSO, Abound Bio

We designed and generated six large (10 to11 each) human VH and VL antibody domain libraries displayed on phage. Selected binders were with good developability and highly effective against SARS-CoV-2 and related coronaviruses as Fc fusion proteins (Li W et al, Cell 2020; Sun Z et al mAbs 2020), including variants found in humans (Zhu X et al PLOS Biology 2021, Sun Z et al bioRxiv, 2021). Ongoing are efforts to improve them and generate new ones.

12:00 pm

Engineering Specific, High-Affinity Decoy Receptors as Antivirals

Erik Procko, PhD, Assistant Professor, Biochemistry, University of Illinois, Urbana-Champaign

Soluble receptors can act as decoys to neutralize virus infection with reduced risk for the emergence of resistance. However, decoy receptors usually lack the specificity and affinity of monoclonal antibodies. Based on the receptors for human cytomegalovirus and SARS-CoV-2, decoys are engineered that resolve these challenges and are demonstrated to be safe and effective in vivo. The decoys broadly bind virus variants with tight affinity and limited potential for escape.

12:30 pm

Engineering Broad and Potent Neutralizing Antibodies to Combat SARS-like Viruses

Laura M. Walker, PhD, CSO, Adagio Therapeutics

The recurrent zoonotic spillover of coronaviruses into humans underscores the need for broadly active countermeasures. We identified and engineered an antibody, ADG-2, that neutralizes SARS-CoV-2 variants of concern and representative SARS-like bat viruses with remarkable potency and protects against SARS and COVID-19 in animal models. ADG-2 is currently in clinical development for the treatment and prevention of SARS-CoV-2 and future emerging SARS-like CoVs.

Andrew Bradbury, MD, PhD, CSO, Specifica

The Specifica Generation3 Library Platform is based on highly developable clinical scaffolds, into which natural CDRs purged of sequence liabilities have been embedded. The platform uses phage and yeast display to directly yield highly diverse (100-1000 clusters differing by Levenshtein distance 30-40), high affinity (20% subnanomolar), developable (>80% lack biophysical liabilities), drug-like antibodies, which in a recent Covid campaign were as potent as antibodies from immune sources.

1:40 pm Refreshment Break in the Exhibit Hall with Last Chance Poster Viewing

TARGETING ION CHANNELS

Andrew Bradbury, MD, PhD, CSO, Specifica
2:15 pm

Molecular Mechanism of TRPA1 Channel Hyperactivation Conferred by a Novel Mutant

Candice Paulsen, PhD, Assistant Professor, Molecular Biophysics and Biochemistry, Yale University

TRPA1 is a non-selective cation channel expressed in primary sensory neurons of the pain pathway. The physiological significance of TRPA1 has been highlighted by the discovery of genetic channelopathies where TRPA1 mutations result in severe pain disorders. Here, I present our data that describes the molecular mechanism of gain-of-function conferred by a novel TRPA1 channelopathy. Our results reveal a novel TRPA1 disease mechanism, paving the way for genetic tool building.

2:45 pm

Development of Antibodies Targeting Connexin Hemichannels for Spinal Cord Injury

Jean X. Jiang, PhD, Professor, Biochemistry and Structural Biology, UT Health Science Center, San Antonio

Spinal cord injury (SCI) causes severe disability. We developed an inhibitory antibody (MHC1) that inhibited connexin hemichannels, reduced secondary damage in two incomplete SCI mouse models. MHC1 after SCI significantly improved hind limb locomotion function by a single administration associated with decreased gliosis and lesion sizes, increased white and gray matter sparing, and improved neuronal survival. Targeting hemichannels with an antibody provides a new, innovative therapeutic approach in treating SCI.

3:15 pm

Structural and Functional Studies of the Cholesterol Transporter NPC1L1

Xinchao Yu, PhD, Principal Scientist, Structural Biology, Amgen, Inc.

We present cryo–EM structures of NPC1L1 in the apo form and complexed with ezetimibe to understand NPC1L1-mediated cholesterol transport and ezetimibe inhibition.. The apo structure represents an open state and the N-terminal domain interacts loosely with the rest of NPC1L1, leaving the central cavity accessible. The ezetimibe-bound form signifies a closed state in which the NTD rotates ~60°, creating a continuous tunnel enabling cholesterol movement into the plasma membrane. Ezetimibe blocks cholesterol transport by occluding the tunnel. These findings provide insight into the MOA of NPC1L1-mediated cholesterol transport and ezetimibe inhibition, paving the way for more effective therapeutic development.


3:45 pm Close of Conference