Cambridge Healthtech Institute's 11th Annual

Antibodies Against Membrane Protein Targets – Part 2

Engineering and Development of Biotherapeutics for Membrane Protein Targets

September 27 - 28, 2023 EDT

As the industry increasingly shifts its attention to biologics, more attention is being paid to the prospect of developing biotherapeutics against membrane-bound targets. For these large target classes, biologics offer improved selectivity, an alternative for targets with known function that have not been amenable to small molecule drugs and the potential for targeted delivery of therapeutics. For the field to advance, fundamental challenges in antigen quality and presentation, discovery methodologies, protein engineering and the pace of discovery must be resolved. This two-part meeting provides a forum in which discovery biologists and protein engineers can come together to discuss next generation strategies and technologies that will allow biologic drugs for the GPCR, ion channel and transporter target families to advance into the clinic and beyond.

Wednesday, September 27

PLENARY KEYNOTE PROGRAM

10:40 am

Plenary Chairperson’s Remarks

An-Dinh Nguyen, Team Lead, Discovery on Target, Cambridge Healthtech Institute

10:45 am

PLENARY: The New Science of Therapeutics

Jay E. Bradner, MD, Physician Scientist, Former President, Novartis Institutes for BioMedical Research, Inc.

I will share reflections on how new paradigms in the science of therapeutics are creating opportunities to approach historic challenges in medicine. Specifically, I will share approaches to targeting transcription factors and discuss how modularity is a paradigm for next-generation low-molecular weight and biological therapeutics. Finally, I will offer reflections on drug development and the fitness, opportunities, and challenges of the biomedical ecosystem.

11:30 am

PLENARY: Accelerating Drug Discovery Using Machine Learning and Cell Painting Images

Anne E. Carpenter, PhD, Senior Director, Imaging Platform & Institute Scientist, Broad Institute

Shantanu Singh, PhD, Senior Group Leader, Machine Learning, Imaging Platform, Broad Institute

Microscopy images can reveal whether a cell is diseased, is responding to a drug treatment, or whether a pathway has been disrupted by a genetic mutation. In a strategy called image-based profiling, often using the Cell Painting assay, we extract hundreds of features of cells from images. Just like transcriptional profiling, the similarities and differences in the patterns of extracted features reveal connections among diseases, drugs, and genes.

Enjoy Lunch on Your Own12:15 pm

Welcome Remarks1:45 pm

ENGINEERING AND DEVELOPMENT STRATEGIES FOR GPCR AND ION CHANNEL TARGETS

1:50 pm

Chairperson’s Remarks

Mauro Mileni, PhD, Founder & CEO, Abilita Bio

1:55 pm

Strategy for Targeting Class A GPCRs Based on Structural Insights

Dawei Sun, PhD, Scientist, Structural Biology, Genentech

G protein-coupled receptors (GPCRs) are the largest class of cell surface drug targets which play central roles in regulating many cellular and physiological processes. We present structures of a family A GPCR in both the inactive, antibody-bound, and the active, ligand-bound state. Our structures elucidate a novel ligand-mediated activation mechanism and shed light on the molecular mechanisms of GPCR-ligand recognition and antibody-mediated inhibition, potentially facilitating therapeutic intervention on this target.

2:25 pm

Novel Multi-Specific Biomolecules to Modulate Membrane Proteins

Xin Zhou, PhD, Assistant Professor, Biological Chemistry & Molecular Pharmacology, Dana-Farber Cancer Institute, Harvard Medical School

Targeted protein degradation is an emerging concept for regulating challenging membrane drug targets. Unlike traditional antibody approaches, targeted degradation methods do not rely on neutralizing binders. This presentation introduces a new protein degradation technology based on multi-specific antibodies. This novel molecular archetype is highly effective in degrading various types of membrane proteins, including single-pass, multi-pass, native, or synthetic receptors, with a degradation efficiency of over 90% in various cellular systems.

2:55 pm Disruptive Antibody Discovery & Development Solutions for Challenging Targets

Volker Lang, PhD, Managing Director, AbCheck s.r.o.

AbCheck has developed a number of technologies for efficiently discovering high-quality MAbs for next-generation protein therapeutics. Our drug discovery platform offers modular solutions to overcome target-specific challenges and improve success rates for drug discovery campaigns. Our proprietary microfluidics approach enables direct one-step sorting for function and/or other critical criteria with high throughput of millions of droplets per day for the discovery of antibodies to both known and emerging functional targets.

Refreshment Break in the Exhibit Hall with Poster Viewing3:25 pm

4:05 pm

Insights from Current Pipelines of Antibody-Based Therapeutics against GPCR, Ion Channel, and Transporter Targets

Catherine Hutchings, PhD, Independent Consultant

Multi-pass transmembrane proteins represent some of the most important drug target classes across a wide range of therapeutic areas. An update on antibody-based therapeutics in the GPCR, ion channel, and transporter R&D pipeline will be provided outlining the breadth and diversity of the target landscape.

4:35 pm

Anti-GPCR Antibody Discovery for Inflammatory and Fibrotic Disease

Joseph Illingworth, PhD, CSO, DJS Antibodies

DJS Antibodies is a biotech company focused on discovery of antibodies to GPCRs, aiming to develop treatments for inflammatory and fibrotic diseases. In October 2022, we joined AbbVie, Inc., where we are expanding on this core mission while acting as AbbVie’s first UK research site. In this talk we will share our experiences discovering and developing the first monoclonal antibody inhibitor of LPAR1, a clinically-validated target for fibrotic disease.

Dinner Short Course Registration*5:00 pm

*Premium Pricing or separate registration required. See Short Courses page for details.

5:05 pm

Enabling the Discovery of Therapeutic Antibodies Targeting Challenging Membrane Proteins

Mauro Mileni, PhD, Founder & CEO, Abilita Bio

Discovering therapeutic antibodies against multi-span membrane proteins, such as GPCRs and ion channels, remains a formidable challenge primarily due to poor antigen quality. The EMP technology can remove roadblocks for the most challenging targets, by enabling use of the whole target protein with properly folded transmembrane domains to be employed in discovery campaigns. Case studies will be shown where antibody hits with high affinity, selectivity, and developability were identified.

Diversity Discussion (Sponsorship Opportunity Available)5:05 pm

IN-PERSON GROUP DISCUSSION:

Embracing All Shades of Diversity

Stephanie Ashenden, PhD, Senior Informatician, Artificial Intelligence & Machine Learning, AstraZeneca

Dele Babalola, Senior Director, Clinical Data Management, Morphic Therapeutic

Saudat Fadeyi, PhD, MBA, Director, Business Development, Ovid Therapeutics

Rabia Khan, PhD, MBA, CEO, Serna Bio

Daniel La, PhD, Vice President & Head, Medicinal Chemistry, Triana Biomedicines, Inc.

Joel Omage, Research Scientist II, CVM Disease Area, Novartis Institutes for Biomedical Research, Inc.

Join us for this interactive, informal, candid 55-minute discussion on welcoming and increasing all aspects of diversity in the life sciences. We have invited some engaging speakers to share their stories and experiences on initiatives that have and haven’t worked. Our goal is to help the audience learn, question, and get motivated to improve diversity in their own environments. This discussion will not be recorded nor available for on-demand access.

Topics for discussion will include, but certainly not be limited to: 

  • Importance of fostering empathy 
  • Recognizing and supporting neurodiversity
  • Encouraging and implementing diversity in thought
  • Creating avenues for improving gender diversity and participation
  • Increasing racial diversity, particularly in leadership positions
  • Reaching low income and underprivileged neighborhoods to eliminate any “zipcode bias”
  • Understanding and addressing other hidden barriers and biases
  • Implementing mentorship and internship programs that are simple yet impactful​​

Close of Day8:00 pm

Thursday, September 28

Registration and Morning Coffee7:30 am

GPCR BIOTHERAPEUTICS

8:00 am

Chairperson’s Remarks

Rajesh Sundaresan, PhD, Scientific Leader and GSK Fellow, Protein Cell and Structural Sciences, GlaxoSmithKline

8:05 am

Discovery and Development Story of AD-214, an Fc-Fusion Protein i-Body for Fibrosis

Michael Foley, PhD, CSO, AdAlta

i-bodies are small, stable, human scaffolds inspired by the shark single domain antibodies. AD-214 is an i-body with affinity for CXCR4, a GPCR which is known to be upregulated in one cancer and several fibrotic conditions. AD-214 has anti-fibrotic activity in several preclinical models of fibrosis and has been found to be safe in a first in human clinical trial. The i-body platform has potential in several other disease modalities.

8:35 am

Discovery of High-Affinity Functional Antibodies Specific for CXCR5 and Other Multi-Pass Membrane Proteins

Ernest Smith, PhD, Senior Vice President, Research; CSO, Antibody Discovery, Vaccinex

We have developed a fusion protein technology to enable the direct incorporation of multi-pass membrane proteins into the membrane of two antigenically distinct poxviruses. The protein of interest is correctly folded and expressed in the cell-derived viral membrane and does not require any detergents or refolding before downstream use. Antigen expressing virus can be readily purified and used for antibody selection using any in vitro display platform or for immunization and ex vivo antibody discovery. We will describe the use of this technology to discovery high-affinity functional antibodies specific for CXCR5 and other multi-pass membrane proteins. 

9:05 am

Artificial Intelligence-Based de novo Design of Antibodies against GPCR and Ion Channel Targets

Murat Tunaboylu, PhD, Co-Founder and CEO, Antiverse

At Antiverse, we have developed an Artificial Intelligence (AI)-powered de novo antibody discovery platform, which designs antibody candidates against difficult-to-drug targets, including GPCRs and ion channels. Computational methods offer strong advantages over traditional antibody discovery methods. Through a combination of machine learning to design target-specific antibody libraries and hyper-expressing cell lines expressing abundant epitope, we facilitate the generation of diverse antibody candidates, with enhanced affinity, specificity, and improved therapeutic potential.

9:35 am

Agonist Biologics to MC1R: A New Way to Address Autoimmune and Related Conditions

Thomas Fontaine, Senior Researcher, Confo Therapeutics

Recent studies have suggested a potential link between MC1R and autoimmune diseases. However, the lack of selective tools has slowed down the development of new drugs. We will discuss how we have identified very selective, high-potent MC1R agonist biologics using Confo’s proprietary technology to lock GPCRs in the active state, and how these exhibit anti-inflammatory activity in a preclinical in vivo model.

In-Person Group Discussions10:05 am

In-Person Group Discussions are informal, moderated discussions, allowing participants to exchange ideas and experiences and develop future collaborations around a focused topic. Each discussion will be led by a facilitator who keeps the discussion on track and the group engaged. To get the most out of this format, please come prepared to share examples from your work, be a part of a collective, problem-solving session, and participate in active idea sharing. Please visit the In-Person Group Discussions page on the conference website for a complete listing of topics and descriptions.

IN-PERSON GROUP DISCUSSION 7B1:

Avoiding Roadblocks: Maneuvering the Challenges of Difficult Targets

Ross Chambers, PhD, Vice President, Antibody Discovery, Integral Molecular, Inc.

  • Antigen design: antigen strategies and engineering for optimal target presentation
  • Antibody sources: pros and cons of naive and immune libraries, and the benefits of using divergent species for targets that are highly conserved
  • Screening: best approaches to identify diverse antibody panels, and merits of B cell cloning vs. display technologies
  • Specificity: how to assess off-target binding​

Coffee Break in the Exhibit Hall with Poster Viewing10:50 am

11:30 am

Novel Antigen Formats for Improved Ab Discovery against Challenging Integral Membrane Proteins

Rajesh Sundaresan, PhD, Scientific Leader and GSK Fellow, Protein Cell and Structural Sciences, GlaxoSmithKline

Delivering antigens/immunogens for biologics discovery against challenging membrane targets is often a bottleneck in the discovery process. At GSK we have successfully employed both novel genetic and biochemical approaches, through an enabling platform, to deliver membrane proteins for Ab discovery programs. I would like to present our success stories and key learnings from this exercise, highlighting the improvement in cycle times, thereby allowing early start to screening campaigns.

12:00 pm

KEYNOTE PRESENTATION: Multiplexed Validation and Detection of Anti-GPCR Antibodies

Thomas P. Sakmar, MD, Professor, Chemical Biology, Rockefeller University

We developed a multiplexed immunoassay to test >400 anti-GPCR Abs from the Human Protein Atlas targeting a library of 215 expressed GPCRs representing all GPCR subfamilies. We found that ~61% of Abs tested were selective for their intended target, ~11% bound off-target and ~28% did not bind to any GPCR. These results provide insights into the immunogenicity of GPCR epitopes and form a basis for designing therapeutic Abs and for detecting pathological auto-anti-GPCR Abs. 

Enjoy Lunch on Your Own12:30 pm

Dessert Break in the Exhibit Hall with Last Chance for Poster Viewing1:35 pm

2:15 pm

Chairperson’s Remarks

Iwan Zimmermann, PhD, CSO, Linkster Therapeutics AG

2:20 pm

Discovery and Optimization of Novel GPCR Biologics for CV/Renal Disease

Peter McNamara, PhD, CSO, Tectonic Therapeutic

Complex cellular targets such as G protein-coupled receptors (GPCRs) and other multi-transmembrane proteins represent a significant challenge for therapeutic antibody discovery, primarily because of poor stability of the target protein upon extraction from cell membranes. I will present the strategy we used to discover a GPCR biologic with optimized potency, PK, and biophysical characteristics and will also discuss the criticality of antigen design strategy to connect affinity maturation to potency improvements.

TARGETING TRANSPORTERS AND ION CHANNELS

2:50 pm

Conformation-specific Synthetic Antibodies Discriminate Multiple Functional States of the Ion Channel CorA

Satchal K. Erramilli, PhD, Principal Scientist, Meso Scale Diagnostics

CorA is a homopentameric magnesium channel in prokaryotes, and undergoes a series of asymmetric ion-dependent conformational transitions leading to activation. In order to thoroughly characterize these transitions, we determined a panel of conformation-specific synthetic antibodies against CorA using competitive selections and a robust phage display platform for membrane protein antibody discovery. This work offers a case study on trapping functional states of membrane proteins for both basic and applied research.

3:20 pm

Rapid Generation of Conformation-Specific Antibodies Using the Linkster Discovery Platform

Iwan Zimmermann, PhD, CSO, Linkster Therapeutics AG

Antibody drug campaigns against challenging targets often lead to non-developable antibodies. Failures are associated with (i) the high biological target complexity of ion channels, GPCRs, and SLC transporters, (ii) low library quality, and (iii) display and screening technologies unfit for non-controlled conditions. Here, case studies of highly stable and conformation-specific antibodies are presented using the smart library design and novel technology of Linkster discovery platform.

3:50 pm

Therapeutic Antibody against MCT1 Transporter

Jay Rothstein, PhD, CSO, ImmuNext

Monocarboxylate transporter 1 (MCT1) is a membrane protein that transports lactate and is required for effector functions of activated immune cells. Blocking lactate transport has a potential therapeutic benefit for treating a wide number of autoimmune diseases. To address this unmet need we developed an anti-human MCT1 mAb that blocks solute transport (lactate efflux) from activated lymphocytes. This first-in-class inhibitor represents a new class of drugs to treat autoimmune diseases.

Close of Conference4:20 pm