Cambridge Healthtech Institute’s 6th Annual

Degraders and Molecular Glues – Part 2

New Targets, Ligases, Assays for Induced Proximity and Degradation

October 2 - 3, 2024 EDT

Hetero bifunctional molecules like proteolysis-targeting chimeras (PROTACs), monovalent molecules like molecular glues, and other novel modalities are utilizing the ubiquitin-proteasome, lysosome, and autophagy systems to seek out previously “undruggable” targets for therapeutic intervention. Cambridge Healthtech Institute’s two-part conference on Degraders and Molecular Glues brings together experts from industry and academia to discuss both induced proximity and targeted protein degradation as a viable therapeutic approach. Part 2: Focuses on emerging assays and screening strategies for identifying new drug targets, ligases, and neosubstrates for induced proximity and targeted degradation.

Wednesday, October 2

PLENARY KEYNOTE PROGRAM

10:50 am

Plenary Keynote Chairperson’s Remarks

An-Dinh Nguyen, Team Lead, Discovery on Target, Cambridge Healthtech Institute

10:55 am PLENARY KEYNOTE:

Discovery of Transformative Rx to Treat Obesity and Related Diseases

Richard DiMarchi, PhD, Distinguished Professor of Chemistry and Chair, Biomolecular Sciences, Indiana University; former Executive, Lilly and Novo Research Labs

Obesity represents a medicinal challenge that warrants broad molecular diversity. We have pioneered the recruitment of endogenous hormones and physiological mechanisms optimized for pharmacological purposes to address it. The discovery of single-molecule, multi-mechanism incretins enables breakthrough efficacy in lowering body weight. The integrated pharmacology of these peptides, with endocrine proteins and nuclear hormones, is providing a library of drug candidates that promises even greater clinical outcomes and therapy for associated diseases that have historically proven as intractable to treat as obesity once constituted.

11:40 am PLENARY KEYNOTE:

Fragment-Based Drug Discovery for Elusive Cancer Targets

Stephen W. Fesik, PhD, Professor of Biochemistry, Pharmacology & Chemistry; Orrin H. Ingram II Chair in Cancer Research, Vanderbilt University

The most highly validated cancer targets (KRAS, MYC, and WNT) affecting the majority of cancers are thought to be impossible to drug. Using fragment-based methods that I pioneered over 25 years ago, we have discovered mutant selective and pan KRAS inhibitors, potent inhibitors of the MYC cofactor WDR5, and degraders of b-catenin in the WNT pathway. These novel inhibitors/degraders should have a tremendous impact on cancer treatment in the future.

Enjoy Lunch on Your Own12:25 pm

PROXIMITY-INDUCED THERAPEUTICS

1:45 pmWelcome Remarks
1:50 pm

Chairperson's Remarks

Thomas Kodadek, PhD, Professor, Department of Chemistry, University of Florida, Scripps Biomedical Research

1:55 pm

FEATURED PRESENTATION: Ubiquitin-Independent Protein Degradation

Thomas Kodadek, PhD, Professor, Department of Chemistry, University of Florida, Scripps Biomedical Research

Targeted protein degradation is usually achieved using chemical dimerizers that bring into proximity a target protein and an E3 ubiquitin ligase. An alternative strategy is to deliver the target directly to the proteasome and bypass the requirement for poly-ubiquitylation. We present here an engineered cell line that allows the strengths and weaknesses of ubiquitin-independent degraders (UIDs) to be evaluated. We also discuss progress towards the discovery of proteasome ligands for the construction of UIDs, including the development of novel macrocyclic peptides with greatly enhanced passive cell permeability.

2:25 pm

Mini-PROTACs

Hai Rao, PhD, Professor and Chair, Department of Biochemistry, Southern University of Science and Technology, China

Proteolysis-targeting chimera (PROTAC) that selectively eliminates detrimental proteins represents a promising therapeutic strategy for various diseases. We have developed a set of PROTACs with the short and interchangeable degradation signals that attract several distinct E3 ubiquitin ligases. We demonstrate the utility and efficacy of these mini-PROTACs in vitro and in vivo, expanding the repertoire of limited ligands and degradation pathways available for PROTACs.

2:55 pm

Proximity Biosensor Assay for PROTAC Ternary Complex Analysis

Ulrich Rant, Professor/Director, Physical Chemistry, TU Dresden/Kurt-Schwabe-Institute for Bioanalytical Systems

Ternary complexes present challenges in analyzing molecular interactions due to their reliance on cooperativity and avidity, beyond binary affinities. We introduce a proximity binding assay that simultaneously measures binary and ternary interaction kinetics on a biosensor surface, using a Y-shaped DNA scaffold and fluorescence methods. This assay is applied to CRBN, VHL, and various PROTACs, revealing insights into ternary complex stability and binding kinetics.

Refreshment Break in the Exhibit Hall with Poster Viewing3:25 pm

4:15 pm FIRESIDE CHAT:

What Does the Future of Induced Proximity-based Therapeutics Look Like?

PANEL MODERATOR:

Thomas Kodadek, PhD, Professor, Department of Chemistry, University of Florida, Scripps Biomedical Research

PANELISTS:

Danette Daniels, PhD, Vice President, Degrader Platform, Foghorn Therapeutics

Josh Hansen, PhD, Senior Vice President, Chemistry, Treeline Biosciences Inc.

Hai Rao, PhD, Professor and Chair, Department of Biochemistry, Southern University of Science and Technology, China

Dinner Short Course Registration*5:15 pm

*Premium Pricing or separate registration required. See Short Courses page for details.

Diversity Discussion5:15 pm

IN-PERSON DISCUSSION: Fostering Diversity through Mentoring

Angelo Andres, Senior Scientist, Chemical Biology, AstraZeneca Pharmaceuticals

Carolyn Cuff, PhD, VP, Immunology Translational Sciences, Johnson & Johnson

Saudat Fadeyi, PhD, MBA, Head, Business Development & Strategy, Samyang Biopharm USA, Inc.

Minji Kim, PhD, MBA, Chief Business Officer, Mineralys Therapeutics, Inc.

Fred Manby, DPhil, Co-Founder & CTO, Iambic Therapeutics

Joel Omage, Research Scientist II, CVM Disease Area, Novartis Institutes for BioMedical Research, Inc.

Join us for this interactive, informal, candid discussion on embracing and increasing diversity in the life sciences. We have invited some engaging speakers to share their stories and experiences on understanding the importance of mentoring. How can we improve diversity—gender, racial, economic, and others—by being a mentor and reaching out as a mentee? As a group, we can share various initiatives that have been launched in different environments and discuss how well they have worked. We are hoping that this event will motivate the audience to learn, think, and execute on ways to improve diversity in their own environments. This discussion will not be recorded nor available for on-demand access.

Topics for discussion will include, but certainly not be limited to:

  • How to increase awareness and address hidden barriers and biases in life sciences
  • How to motivate early-career scientists to seek out mentors and resources
  • How to convince senior leadership to take time for coaching the next generation of leaders and support DEI initiatives
  • How to create simple and impactful opportunities for mentors and mentees to connect and collaborate​​​​

Dinner Short Courses*6:00 pm

*Premium Pricing or separate registration required. See Short Courses page for details.

Close of Day8:30 pm

Thursday, October 3

Registration Open and Morning Coffee7:30 am

INSIGHTS FROM VENTURE CAPITALISTS

8:00 am PANEL DISCUSSION:

Trends in Drug Discovery

PANEL MODERATOR:

Daniel A. Erlanson, PhD, Chief Innovation Officer, Innovation and Discovery, Frontier Medicines Corporation

  • Key drivers of innovation in drug discovery
  • Improvements in translating discoveries from the lab to the clinic
  • Impact of emerging areas like AI/machine learning, targeted degraders and molecular glues
  • Perspectives on current challenges and opportunities​
PANELISTS:

Aimee Raleigh, PhD, Principal, Atlas Venture

Jenna Hebert, PhD, Senior Associate, RA Capital Management

Jamie Kasuboski, PhD, Partner, Luma Group

Devin Quinlan, PhD, Principal, Investment, MPM BioImpact Inc.

Swetha Murali, PhD, Vice President, OMX Ventures

EXPLORING NOVEL MOLECULAR GLUES

8:45 am

Chairperson's Remarks

Yong Cang, PhD, Professor, ShanghaiTech University; Co-Founder & CSO, Degron Therapeutics

8:50 am

Non-Degrading Molecular Glues—A Novel Platform for Unlocking the Undruggable Genome 

Rick Ewing, PhD, Vice President and Head of Chemistry, Rapafusyn Pharmaceuticals

Non-degrading Type I molecular glues, FK506, Cyclosporin, and Rapamycin, have delivered marketed therapies. The complex structures of these molecules have limited application to only a limited number of protein targets. The presentation will describe construction of DEL and array libraries of non-degrading molecular glues used for finding chemical starting points for a wide range of intracellular targets. Concepts of topological diversity, cell permeability, and molecular glue characterization will be described.

9:20 am

NST-628 Is a Novel, Potent, Fully Brain-Penetrant MAPK Pathway Molecular Glue That Inhibits RAS- and RAF-Driven Cancers

Klaus Hoeflich, PhD, CSO, Nested Therapeutics Inc.

Alterations in the RAS-MAPK signaling cascade are common across multiple solid tumor types and are a driver for many cancers. NST-628 is a potent pan-RAF-MEK molecular glue that prevents the phosphorylation and activation of MEK by RAF. Cellular, biochemical, and structural analyses of RAF-MEK complexes show that NST-628 engages all isoforms of RAF and prevents the formation of BRAF-CRAF heterodimers, a differentiated mechanism from all current RAF inhibitors. Given its mechanisms that are differentiated from previous therapies, NST-628 is positioned to make an impact clinically in areas of unmet patient need.

9:50 am

Degrading the RNA Binding Protein HuR to Treat BRAF Mutant Cancer

Yong Cang, PhD, Professor, ShanghaiTech University; Co-Founder & CSO, Degron Therapeutics

Human Antigen R (HuR), encoding by ELAVL1, binds and stabilizes mRNAs encoding oncogenic drivers and proinflammatory cytokines. Using our GlueXplorer discovery platform, we have identified novel CRBN-based molecular glue degraders of HuR, a previously undruggable target, and determined BRAF mRNA as one of its major direct targets in cancer cells. A preclinical candidate has been selected for development, and this first-in-class program is moving to clinical testing.

In-Person Breakouts10:20 am

In-Person Breakouts are informal, moderated discussions, allowing participants to exchange ideas and experiences and develop future collaborations around a focused topic. Each discussion will be led by a facilitator who keeps the discussion on track and the group engaged. To get the most out of this format, please come prepared to share examples from your work, be a part of a collective, problem-solving session, and participate in active idea sharing. Please visit the Breakouts page on the conference website for a complete listing of topics and descriptions.

IN-PERSON BREAKOUT 10:

Novel Modalities, E3 Ligases and Ligands for Induced Proximity

Tauseef Butt, PhD, President & CEO, Progenra, Inc.

Rick Ewing, PhD, Vice President and Head of Chemistry, Rapafusyn Pharmaceuticals

  • Technologies enabling future induced proximity work
  • Improving potency, modularity and utility of degraders and glues
  • Discovery and validation of new degrader chemistries and functionality
  • Pursuing new E3 ligases and cellular pathways
  • Red Flags in PROTACs and Pink Flags in molecular glues​
IN-PERSON BREAKOUT 11:

Discovery and Optimization of Molecular Glues

Yong Cang, PhD, Professor, ShanghaiTech University; Co-Founder & CSO, Degron Therapeutics

Murali Ramachandra, PhD, CEO, Aurigene Oncology Ltd.

  • From induced proximity to glues
  • Strategies to identify and screen molecular glues 
  • Value of serendipitous discovery versus rational design
  • Determination of selectivity of molecular glues​
  • Importance of species selectivity for degraders

Coffee Break in the Exhibit Hall with Poster Viewing and Best of Show Awards Announced11:05 am

11:45 am

Efficacy of a First-in-Class Polymerase Theta Degrader in Preclinical Cancer Models

Murali Ramachandra, PhD, CEO, Aurigene Oncology Ltd.

Targeting PolΘ through degradation (glue or PROTAC) may provide the opportunity to ablate PolΘ entirely, which mimics the biological consequences of a PolΘ genetic knockout. We shall present in vitro and in vivo data of our first-in-class degrader of PolΘ for the first time.

12:15 pm

A Molecular Glue Degrader of the WIZ Transcription Factor for Fetal Hemoglobin Induction

Pamela Ting, PhD, Associate Director, Hematology, Novartis Institutes for BioMedical Research

Sickle cell disease affects millions of people worldwide, disproportionately in resource-limited regions. The development of a widely-accessible, oral fetal hemoglobin (HbF) inducer has long been a goal. Here we leveraged a chemical library of CRBN-biased molecular glues to explore HbF reactivation. Phenotypic screening identified the transcription factor WIZ as a previously unrecognized repressor of HbF. Chemical optimization generated potent WIZ degraders, which were well-tolerated and induced HbF in preclinical models.

Enjoy Lunch on Your Own12:45 pm

Dessert Break in the Exhibit Hall with Last Chance for Poster Viewing1:50 pm

DEGRADING TRANSCRIPTION FACTORS

2:30 pm

Chairperson's Remarks

Kristy Stengel, PhD, Assistant Professor, Department of Cell Biology, Albert Einstein College of Medicine

2:35 pm

Targeted Transcription Factor Degradation Reveals Therapeutic Vulnerabilities and Mechanisms of Regulation

Kristy Stengel, PhD, Assistant Professor, Department of Cell Biology, Albert Einstein College of Medicine

Transcription factors (TFs) are among the most frequently mutated and/or translocated genes in cancer, suggesting that a detailed understanding of their mechanism-of-action could better define disease etiology and help identify novel nodes for therapeutic intervention. Recently, our lab has employed novel degron technologies to rapidly degrade TF proteins. This technology, when combined with nascent transcript sequencing and multiomic readouts, allows us to identify direct mechanisms of TF action.

3:05 pm

Discovery of Highly Potent, Selective, and Efficacious STAT3 PROTAC Degraders Capable of Achieving Long-Lasting Tumor Regression

Haibin Zhou, PhD, Associate Research Scientist, Laboratory of Dr. Shaomeng Wang, Department of Hematology & Oncology, University of Michigan

STAT3 is a transcription factor and a promising therapeutic target for cancer and other human diseases. We have discovered a highly potent, selective, and efficacious STAT3 degrader UM-STAT3-1218. UM-STAT3-1218 is a highly promising STAT3 degrader for the treatment of human cancers and other human diseases in which STAT3 plays a key role.

3:35 pm

Novel Heterobifunctional Modalities for Targeted Protein Degradation and Stabilization

H. Ümit Kaniskan, PhD, Associate Professor, Laboratory of Dr. Jian Jin, Pharmacological Sciences, Icahn School of Medicine at Mt. Sinai

The Jian Jin Laboratory at Icahn School of Medicine at Mount Sinai is a leader in discovering novel degraders targeting oncogenic proteins and developing new technologies for advancing targeted protein degradation and stabilization. Our lab’s recent progress will be presented featuring our latest studies such as Methyl-PROTAC, Z-PROTAC, and more.

4:05 pm

In-cell DEL Discovery for Challenging Drug Targets

Elmar Nurmemmedov, PhD, MBA, Co-Founder & CEO, CellarisBio

Cell target engagement provides a unique rationale for discovery of drug candidates to challenging targets, such as transcription factors, whose functional and structural integrity depend on the complex proteomic context inside the cell. MICRO-TAG cell target engagement platform enables discovery, validation and real-time analysis of novel therapeutics within the cellular milieu. When combined with DELs, the platform can discover chemical matter that pertains to the unique disease-driving state of the target.

Close of Conference4:35 pm