Cambridge Healthtech Institute's 6th Annual

Small Molecules for Cancer Targets

Discovering Targeted, Oral-Based Oncology Therapeutics

October 1 - 2, 2024 EDT

Join CHI’s Small Molecules for Cancer Targets conference to hear progress in potential new small molecule-based cancer therapeutics against novel drug targets. Small molecules have the advantage of being able to modulate intracellular proteins, which biologics are too large to reach, thereby widening the cancer-associated pathways that can be modulated. Plus, small molecules have the chemical properties to be made orally bioavailable, offering more convenience for patients and logistics. Challenges remain, however. For example, many intracellular cancer culprits are part of protein complexes for which traditional enzyme inhibitor-based drug discovery approaches don’t apply. Molecular glue and degrader approaches are showing potential for those reasons, but the technologies are in their early days. Share insights, learn from colleagues and stay abreast of the most promising small molecule translational oncology research.

Tuesday, October 1

Registration Open and Morning Coffee7:00 am

NEW APPROACHES FOR TARGETING RAS OR WRN

7:55 amWelcome Remarks
8:00 am

Chairperson's Remarks

Mellissa Nixon, PhD, Senior Scientist, Merck Research Labs

8:05 am

Discovery of FMC-376 a Potent Dual Inhibitor of ‘ON’ and ‘OFF’ States of KRASG12C Broadly Active in PDX Models of Resistance

Snahel Patel, Vice President, Head, Medicinal & Platform Chemistry, Frontier Medicines Corp.

Once viewed undruggable, frequently mutated oncogene KRAS has led to the recent approval of two KRASG12C small molecule covalent inhibitors targeting the inactive GDP-bound (OFF) state. Patient benefit has fallen short with these first-generation inhibitors due to innate or acquired resistance driven by upregulation of the activated GTP-bound (ON) state of KRASG12C. We present the discovery of potent dual inhibitor FMC-376 targeting both active and inactive forms of KRASG12C.

8:35 am

ADT-1004, a 1st-in-class pan-RAS Inhibitor with Antitumor Activity in Mouse Models

Gary A. Piazza, PhD, Professor, Pharmacology, University of South Alabama

Resistance is a limitation of all RAS inhibitors approved or in development. I will present the discovery of ADT-1004, a novel pan-RAS inhibitor with low potential for resistance and unique selectivity for RAS mutant cancer cells. ADT-1004 displayed robust antitumor activity in multiple mouse models of pancreatic cancer without discernable toxicity. Side-by-side comparison showed superior anticancer activity over FDA approved mutant-specific KRAS inhibitors, as well as pan-KRAS inhibitors and other pan-RAS inhibitors in clinical trials.

9:05 am

FEATURED PRESENTATION: Identification of VVD-214/RO7589831, a Clinical-Stage, Covalent Allosteric Inhibitor of WRN Helicase for the Treatment of MSI-High Cancers

Shota Kikuchi, PhD, Director, Chemistry, Vividion Therapeutics

WRN helicase is a promising target for treating cancers with microsatellite instability (MSI), due to its essential role in resolving deleterious non-canonical DNA structures that accumulate in cells with faulty mismatch repair mechanisms. Currently, there are no approved drugs directly targeting human DNA or RNA helicases, in part due to the challenging nature of developing potent and selective compounds to this class of proteins. Here we describe the medicinal chemistry optimization of potency, ADME, and PK properties of chemoproteomic screening hits, which resulted in identification of VVD-214/RO7589831 (Vividion/Roche), a clinical-stage, covalent allosteric inhibitor of WRN.

Networking Coffee Break9:35 am

PROTEIN-STABILIZING STRATEGIES FOR CANCER

10:05 am

Rational Discovery of a Small Molecule Intramolecular Glue Inhibitor of CBL-B that Enhances T-cell Function

Stefan Gajewski, PhD, Structural Biologist, Early Drug Discovery, Nurix Therapeutics Inc

Casitas B lymphoma-b (CBL-B) is a RING-type E3 ubiquitin ligase that plays an important role in regulating T cell function. Loss of CBL-B is associated with enhanced T and NK cell activity which makes it an interesting target for immuno-oncology drug development. We present a rational approach to discover and optimize small molecule inhibitors for CBL-B that elicit a potent T cell activation and antitumor activity.

10:35 am

Inhibiting CBL-B: An E3 Ligase Immuno-Oncology Target

Michael Lambrecht, PhD, Principal Scientist, Drug Discovery, Genentech

Knockout of the RING E3 ubiquitin ligase cbl-b causes tumor rejection in murine models and as such represents a promising target for cancer immunotherapy. We screened a DNA-encoded library and discovered a xanthene-containing lead molecule that bound to and inhibited cbl-b with affinity in the high nanomolar range. An x-ray co-crystal structure showed this lead molecule bound to the SH2 domain of cbl-b. Here we describe these studies in addition to a medicinal chemistry optimization effort that provided an inhibitor with measurable activity against cbl-b in cells.

11:05 am

Accelerating Inhibitor Discovery for Deubiquitinating Enzymes

Wai Cheung Adrian Chan, PhD, Principal Scientist, Enabling Sciences, Odyssey Therapeutics

Deubiquitinating enzymes (DUBs) are a class of ~100 cysteine proteases, of interest as emerging drug targets and for application in targeted protein stabilization. Pairing a bespoke library with activity-based protein profiling as a high-density primary screen, we identify and validate a multitude of promising chemical starting points and a direct path to tool compounds that can be used to decipher DUB function, substrates, and signaling pathways.

11:35 am Exploring the Power of Structural Biology on Degrader Discovery

JIAQUAN WU, General Manager, Biortus

The emerging of protein degradation as a novel therapeutic modality has attracted interest in broad drug discovery community. Unlike conventional small molecular drug discovery, where SBDD has been widely adopted for rational design of hit and lead molecules, the application of structural biology to degrader discovery is only limited to the elucidation of the binding mode of selected lead PROTAC or molecular glue molecules so far. This is largely due to two reasons: one being the lack of robust protocols to assemble stable degradation complexes, and the other being the less than desired resolution of the complex structures solved by ether crystallography or cryoEM. At Biortus, we strive to help the community to evolve degrader discovery from experience-based design to SBDD by exploring our expertise in both protein chemistry and structural biology. We have now established robust methodologies for PROTAC and molecular glue complex structure determination using both crystallography and cryoEM, and are working towards solutions to improve resolution for SBDD.

Transition to Lunch12:05 pm

12:10 pm LUNCHEON PRESENTATION: Drug discovery services from Biortus – Target Proteins, Assay & Screening and Structures

Larry Jin, COO, Biortus

Biortus is a global leading service provider of target proteins, assay & screening and structural biology. Biortus implements AI-powered construct design for protein expression in E. coli, insect cells, mammalian cells, yeast, CFS, and silkworm systems. Biortus's hit finding capabilities cover biochemical, biophysical, and cell-based assay. Biortus's cryoEM platform has the largest service facility so far, with 8 units of electron microscopes and over 60 structural biologists. Biortus also offers catalog proteins via VWR, Cayman, FisherSci, and several other partners.

Session Break12:40 pm

DEGRADERS & CANCER

1:15 pm

Chairperson's Remarks

Philip N. Collier, PhD, Director, Medicinal Chemistry, Kymera Therapeutics

1:20 pm

Abbapolin PLK1 Degraders in Prostate Cancer 

Campbell McInnes, PhD, Professor, Drug Discovery & Biomedical Sciences, University of South Carolina

Inhibition of PLK1 may be key to overcoming resistance to androgen blocking treatments that result in Castration Resistant Prostate Cancer (CRPC) providing new therapeutic options. Using the REPLACE strategy, we found compounds that bind tightly to PLK1 and induce its degradation. Through our hit to lead conversion studies we identified an abbapolin with potent on target cellular engagement of PLK1, good oral pharmacokinetics and antitumor efficacy in prostate xenografts.

1:50 pm

Discovery and Development of pan-KRAS Degraders for Cancer Therapy

Murali Ramachandra, PhD, CEO, Aurigene Oncology Ltd.

Despite recent advances in KRAS inhibitors for cancer therapy, a majority of KRAS alterations remain unaddressed. The rapid emergence of resistance where inhibitors are available underscores the need for novel approaches. We will discuss our focus on targeted protein degradation to eliminate mutant KRAS as a promising avenue for superior and durable efficacy.

2:20 pm

How CETSA can Unlock Targeted Drug Discovery on p53

Stina Lundgren, Head of Business Development, Pelago Bioscience

We will present how we identified and confirmed efficacy of novel p53 modulating compounds. Without any need to modify the native environment of the target, we did a library screen with subsequent selectivity profiling follow-up of hits. Orthogonal activity data then confirmed the effect of p53 activity.

At Pelago Bioscience, we treat difficult to drug targets, like p53, as any other target. We have the tool that help you assess target engagement, without the need to modify the compound or the target protein, we deliver unbiased data.

2:35 pm

Accelerating Hit Identification for Cancer Targets with Biology Building Block Platform

Tiejun Bing, SVP Biology, Biology, ICE Bioscience Inc.

The ICE Bioscience Biology Building Block (BBB) platform accelerates hit identification in oncology drug discovery by offering modular combinations of targets, assay formats, and technologies. A key strength of the platform is its proactive target selection from patents and literature, enabling early assay development. With target data from over 7,000 patents, the platform integrates an extensive and expanding collection of assay formats and technologies, providing clients with over 10000 ready-to-use assays for kinases, DDR, and synthetic lethality, etc. By integrating biochemical, biophysical, and cellular assays, BBB streamlines the discovery of innovative cancer therapeutics.

In-Person Breakouts3:05 pm

In-Person Breakouts are informal, moderated discussions, allowing participants to exchange ideas and experiences and develop future collaborations around a focused topic. Each discussion will be led by a facilitator who keeps the discussion on track and the group engaged. To get the most out of this format, please come prepared to share examples from your work, be a part of a collective, problem-solving session, and participate in active idea sharing. Please visit the Breakouts page on the conference website for a complete listing of topics and descriptions.

IN-PERSON BREAKOUT 5:

Covalent Approaches for Drug Discovery

Paul E. Gormisky, PhD, Senior Director, Enabling Sciences Chemistry, Odyssey Therapeutics

  • Strategies to prioritize targets for covalent drug discovery 
  • Assessing if a covalent ligand or fragment for a novel target can be progressed to a drug (e.g., sufficient pocket, supportive biology) 
  • Role of covalency in other new modalities (degraders, macrocycles)​

Grand Opening Refreshment Break in the Exhibit Hall with Poster Viewing and Best of Show Voting Begins3:35 pm

4:35 pm

FEATURED PRESENTATION: Targeting the PI3K Pathway in Cancers

Anwesha Dey, PhD, Director & Distinguished Scientist, Discovery Oncology, Genentech Inc.

PIK3CA is one of the most frequently mutated oncogenes; the p110α protein it encodes plays a central role in tumor cell proliferation. Inavolisib is a potent and selective p110α inhibitor that promotes the degradation of mutated p110α. The significance of this unique mechanism to trigger specific degradation of mutant p110α without significant change in wild-type p110α protein may result in improved therapeutic index in PIK3CA-mutant tumors.

5:05 pm

The Evolving Chemical Space of Bi-functional Degraders Targeting the CNS

Wylie S. Palmer, PhD, Executive Director, Nurix Therapeutics, Inc.

Description:Bi-functional degraders occupy beyond-rule-of-five chemical space where established rules for drug-likeness cannot easily be applied. In contrast to approved CNS drugs, bi-functional degraders violate most metrics, particularly molecular weight, yet we routinely observe brain penetrance in our programs. For example, NX-5948, a clinical stage orally bioavailable BTK degrader shows CNS exposure and activity both preclinically and clinically. This presentation will explore our evolving understanding of targeting the CNS using degraders.

5:35 pm

IKZF2 Degrader Discovery

Kevin D. Freeman-Cook, PhD, Vice President & Head, Medicinal & Computational Chemistry, Plexium Inc.

The zinc finger transcription factor Helios (IKZF2) is highly expressed in Tregs and plays an important role in helping tumors evade a normal immune response. IKZF2 is a transcription factor that had been considered "undruggable." Here we disclose the discovery and preclinical evaluation of a selective molecular glue degrader of IKZF2 (PLX-4545) which reverses Treg suppression and is currently being evaluated in a Phase 1 trial of healthy volunteers.

Welcome Reception in the Exhibit Hall with Poster Viewing6:05 pm

6:35 pm Book Raffle & Author Signing: Join in person for a chance to win a book and have it autographed!


DNA-Encoded Libraries (Topics in Medicinal Chemistry #40)

Free chapter: A Perspective on 30 Years of DNA-Encoded Chemistry

Written by Barry A. Morgan, PhD, CSO, HitGen Ltd.


Pharmacology in Drug Discovery and Development: Understanding Drug Response, Third Edition

Discount code for 30% off: LIFE30

Written by Terrence P. Kenakin, PhD, Professor, Pharmacology, University of North Carolina at Chapel Hill

Close of Day7:05 pm

Wednesday, October 2

Registration Open and Morning Coffee7:30 am

SMALL MOLECULE IMMUNO-ONCOLOGY TARGETS

7:55 am

Chairperson's Remarks

Jenny Chengyi Shu, PhD, Senior Director, Biology Immunology, Life Mine Therapeutics

8:00 am

Structure-Based Design of DHODH Inhibitors for the Treatment of Acute Myelogenous Leukemia

Justin Cisar, PhD, Principal Scientist, Medicinal Chemistry, Janssen Pharmaceuticals Inc.

Acute myelogenous leukemia (AML), a disease of the blood and bone marrow, is characterized by the inability of myeloblasts to differentiate into mature cell types. Dihydroorotate dehydrogenase (DHODH) is an enzyme well-known in the pyrimidine biosynthesis pathway; however, small molecule DHODH inhibitors were recently shown to induce differentiation in multiple AML subtypes. Using virtual screening and structure-based drug design approaches, a new series of N-heterocyclic 3-pyridyl carboxamide DHODH inhibitors were discovered. Two lead compounds have potent biochemical and cellular DHODH activity, favorable physicochemical properties, and efficacy in a preclinical model of AML.

8:30 am

Identification of a Novel Linker Enabling Bioconjugation of a Cyclic Dinucleotide for the STING Antibody-Drug Conjugate TAK-500

Hong Myung Lee, PhD, Associate Director, Medicinal Chemistry, Takeda Pharmaceuticals Inc.

The chemistry strategy was established to enable targeted delivery of a cyclic dinucleotide STING agonist TAK-676 to CCR2+ myeloid cells through an antibody-drug conjugate approach. A self-immolative spacer between the adenine of TAK-676 and the cleavable dipeptide linker rendered a linker payload with enhanced plasma stability. Stochastic cysteine conjugation of the linkers provided immune cell-stimulating ADC TAK-500. In mouse models, mTAK-500 showed antitumor activity driven by immune cell activation.

9:00 am

GPCRs of the Tumor Microenvironment as Novel Immuno-Oncology Drug Targets

Stephan Schann, PhD, CSO, Domain Therapeutics SA

Immunotherapy, a groundbreaking paradigm in cancer treatment, has achieved remarkable success, including the cure of metastatic diseases. However, many patients see no benefit as multiple resistance mechanisms can hinder the effectiveness of immunotherapy. Our innovative approach at Domain is powered by precision. We have developed a unique pipeline of GPCR targeting drug candidates, which aims to unlock new therapeutic possibilities in cancer. These candidates specifically target immunosuppressive mechanisms, enabling us to deliver innovative immunotherapies. In this presentation, we’ll delve into the identification of novel immunosuppressive GPCRs. Additionally, we’ll explore small molecule drug discovery approaches, emphasizing Domain’s approach of precision research.

9:30 am Quantification of Small Molecule and Phosphopeptide Binding Affinity Selectivity Across Human SH2 Domains Assays

Jean Bernatchez, Sr Scientist & R&D Grp Leader, In Vitro Pharmacology, Eurofins Discovery

SH2 domains are an emerging target class for the development of small molecules which disrupt protein-protein interactions, as well as for the development of targeted protein degraders. We present screening validation data against a panel of 95 wild type and 7 mutant SH2 domain assays for a collection of reported small molecules and peptides which bind to this protein-protein interaction module.

Coffee Break in the Exhibit Hall with Poster Viewing10:00 am

PLENARY KEYNOTE PROGRAM

10:50 am

Plenary Keynote Chairperson’s Remarks

An-Dinh Nguyen, Team Lead, Discovery on Target, Cambridge Healthtech Institute

10:55 am PLENARY KEYNOTE:

Discovery of Transformative Rx to Treat Obesity and Related Diseases

Richard DiMarchi, PhD, Distinguished Professor of Chemistry and Chair, Biomolecular Sciences, Indiana University; former Executive, Lilly and Novo Research Labs

Obesity represents a medicinal challenge that warrants broad molecular diversity. We have pioneered the recruitment of endogenous hormones and physiological mechanisms optimized for pharmacological purposes to address it. The discovery of single-molecule, multi-mechanism incretins enables breakthrough efficacy in lowering body weight. The integrated pharmacology of these peptides, with endocrine proteins and nuclear hormones, is providing a library of drug candidates that promises even greater clinical outcomes and therapy for associated diseases that have historically proven as intractable to treat as obesity once constituted.

11:40 am PLENARY KEYNOTE:

Fragment-Based Drug Discovery for Elusive Cancer Targets

Stephen W. Fesik, PhD, Professor of Biochemistry, Pharmacology & Chemistry; Orrin H. Ingram II Chair in Cancer Research, Vanderbilt University

The most highly validated cancer targets (KRAS, MYC, and WNT) affecting the majority of cancers are thought to be impossible to drug. Using fragment-based methods that I pioneered over 25 years ago, we have discovered mutant selective and pan KRAS inhibitors, potent inhibitors of the MYC cofactor WDR5, and degraders of b-catenin in the WNT pathway. These novel inhibitors/degraders should have a tremendous impact on cancer treatment in the future.

Close of Small Molecules for Cancer Targets Conference12:25 pm